SingleCellSignalR : Inference of ligand-receptor interactions from single-cell data6 months ago
What is it for? | Main worfklow | Acknowledgements | Session Information
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Battlefield8 months ago
Introduction | What is it for? | Starting point | Interfaces between clusters | Intra-cluster layers | Inter/Intra-cluster trajectories | Spatial neighborhood | Ending point | Session Information
BulkSignalR : Inference of ligand-receptor interactions from bulk data or spatial transcriptomics1 years ago
Configure local cache and hidden environment variables | Session Information
BulkSignalR : Inference of ligand-receptor interactions from bulk data or spatial transcriptomics1 years ago
Introduction | What is it for? | Starting point | How does it work? | Parallel mode settings | First Example | Loading the data | Building a BSRDataModel object | Building a BSRInference object | Reduction strategies | Reducing a BSRInference object to pathways | Reducing a BSRInference object to the best pathways | Reducing to ligands or receptors | Combined reductions | Building a BSRSignature object | Scoring by ligand-receptor | Scoring by pathway | Other visualization utilities | Heatmap of ligand-receptor-target genes expression | AlluvialPlot | BubblePlot | Chordiagram | Network Analysis | Non-human data | Spatial Transcriptomics | Acknowledgements | Session Information
BulkSignalR : Inference of ligand-receptor interactions from bulk data or spatial transcriptomics1 years ago
Cluster-based differential analysis | Technical notes | Session Information